Index

A

activation (GraphCNN attribute)

activation_function (GraphCNN attribute)

B

BIOSTUDIES_FTP (in module sequence_unet.models)

build() (GraphCNN method)

C

call() (GraphCNN method) (WeightedMaskedBinaryCrossEntropy method) cnn_top_model() (in module sequence_unet.models)

contact_graph (SequenceUNETMapFunction attribute) contact_graph() (in module sequence_unet.graph_cnn) CUSTOM_OBJECTS (in module sequence_unet.models)

D

download_all_models() (in module sequence_unet.models)

download_trained_model() (in module sequence_unet.models)

F

freq_input (SequenceUNETMapFunction attribute)

from_logits (WeightedMaskedBinaryCrossEntropy attribute)

G

get_config() (GraphCNN method) (WeightedMaskedBinaryCrossEntropy method)

GraphCNN (class in sequence_unet.graph_cnn)

L

load_trained_model() (in module sequence_unet.models)

M

masked_accuracy() (in module sequence_unet.metrics) masked_binary_crossentropy() (in module sequence_unet.metrics) MODELS (in module sequence_unet.models) module sequence_unet.graph_cnn sequence_unet.metrics sequence_unet.models sequence_unet.predict

N

neg_weight (WeightedMaskedBinaryCrossEntropy attribute)

num_layers (SequenceUNETMapFunction attribute)

O

one_hot_sequence() (in module sequence_unet.predict)

output_shapes (SequenceUNETMapFunction attribute) output_types (SequenceUNETMapFunction attribute)

P

padding_rows() (in module sequence_unet.predict) pos_weight (WeightedMaskedBinaryCrossEntropy attribute)

predict_proteinnet() (in module sequence_unet.predict) predict_sequence() (in module sequence_unet.predict)

S

sequence_unet() (in module sequence_unet.models) sequence_unet.graph_cnn module sequence_unet.metrics module

sequence_unet.models module sequence_unet.predict module SequenceUNETMapFunction (class in sequence_unet.predict)

T

threshold (SequenceUNETMapFunction attribute)

U

units (GraphCNN attribute)

W

WeightedMaskedBinaryCrossEntropy (class in sequence_unet.metrics)

weights (SequenceUNETMapFunction attribute)